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2017
  • Luu, L., Octavia, S., Zhong, L., Raftery, M., Sintchenko, V., Lan, R. (2017). Characterisation of the Bordetella pertussis secretome under different media. Journal of Proteomics. 158 , 43-51. [More Information]
  • Marais, B., Sintchenko, V. (2017). Epidemic spread of multidrug-resistant tuberculosis in China. The Lancet Infectious Diseases. 17 (3) , 238-239. [More Information]
  • Eden, J., Rose, K., Ng, J., Shi, M., Wang, Q., Sintchenko, V., Holmes, E. (2017). Francisella tularensis subsp. holarctica in Ringtail Possums, Australia. Emerging Infectious Diseases. 23 (7) , 1198-1201. [More Information]

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  • Octavia, S., Wang, Q., Tanaka, M., Sintchenko, V., Lan, R. (2017). Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection. Infection, Genetics and Evolution. 51 , 17-20. [More Information]
  • Ho, J., Jelfs, P., Nguyen, P., Sintchenko, V., Fox, G., Marks, G. (2017). Pooling sputum samples to improve the feasibility of Xpert(�) MTB/RIF in systematic screening for tuberculosis. International Journal of Tuberculosis and Lung Disease. 21 (5) , 503-508. [More Information]
  • Ho, J., Jelfs, P., Nguyen, P., Sintchenko, V., Fox, G., Marks, G. (2017). Pooling sputum samples to improve the feasibility of Xpert(®) MTB/RIF in systematic screening for tuberculosis. International Journal of Tuberculosis and Lung Disease. 21 (5) , 503-508. [More Information]

2016
  • Subedi, S., Kong, F., Jelfs, P., Gray, T., Xiao, M., Sintchenko, V., Chen, S. (2016). 16S-23S internal transcribed spacer region PCR and sequencer-based capillary gel electrophoresis has potential as an alternative to high performance liquid chromatography for identification of slowly growing nontuberculous mycobacteria. PloS One. 11 (10) , 1-15. [More Information]
  • Safarchi, A., Octavia, S., Luu, L., Tay, C., Sintchenko, V., Wood, N., Marshall, H., McIntyre, P., Lan, R. (2016). Better colonisation of newly emerged Bordetella pertussis in the co-infection mouse model study. Vaccine. 34 (34) , 3967-3971. [More Information]
  • Dickeson, D., Chen, S., Sintchenko, V. (2016). Concordance of four commercial enzyme immunoassay and three immunoblot formats for the detection of Lyme borreliosis antibodies in human serum: The two-tier approach remains. Advances in Anatomic Pathology. 48 (3) , 251-256. [More Information]

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  • Moradigaravand, D., Grandjean, L., Martinez, E., Li, H., Zheng, J., Coronel, J., Moore, D., Torok, M., Sintchenko, V., Huang, H., et al (2016). DfrA-thyA double deletion in para-aminosalicylic acid resistant Mycobacterium tuberculosis Beijing strains. Antimicrobial Agents and Chemotherapy. 60 (6) , 3864-3867. [More Information]
  • Fu, S., Octavia, S., Wang, Q., Tanaka, M., Tay, C., Sintchenko, V., Lan, R. (2016). Evolution of variable number tandem repeats and its relationship with genomic diversity in Salmonella typhimurium. Frontiers in Microbiology. 7 , 1-12. [More Information]
  • Safarchi, A., Octavia, S., Wu, S., Kaur, S., Sintchenko, V., Gilbert, G., Wood, N., McIntyre, P., Marshall, H., Keil, A., et al (2016). Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic. Journal of Infection. 72 (4) , 468-477. [More Information]
  • Gurjav, U., Jelfs, P., Hill-Cawthorne, G., Marais, B., Sintchenko, V. (2016). Genotype heterogeneity of Mycobacterium tuberculosis within geospatial hotspots suggests foci of imported infection in Sydney, Australia. Infection, Genetics and Evolution. 40 , 346-351. [More Information]
  • Outhred, A., Holmes, N., Sadsad, R., Martinez, E., Jelfs, P., Hill-Cawthorne, G., Gilbert, G., Marais, B., Sintchenko, V. (2016). Identifying Likely Transmission Pathways within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome Sequencing. PloS One. 11 (3) , 1-15. [More Information]
  • Yu, M., Nagalingam, G., Ellis, S., Martinez, E., Sintchenko, V., Spain, M., Rutledge, P., Todd, M., Triccas, J. (2016). Nontoxic metal-cyclam complexes, a new class of compounds with potency against drug-resistant Mycobacterium tuberculosis. Journal of Medicinal Chemistry. 59 (12) , 5917-5921. [More Information]
  • Chan, C., Octavia, S., Sintchenko, V., Lan, R. (2016). SnpFilt: A pipeline for reference-free assembly-based identification of SNPs in bacterial genomes. Computational Biology and Chemistry. 65 , 178-184. [More Information]
  • Clarke, M., McIntyre, P., Blyth, C., Wood, N., Octavia, S., Sintchenko, V., Giles, L., Quinn, H., Hill, V., Hanly, G., et al (2016). The relationship between Bordetella pertussis genotype and clinical severity in Australian children with pertussis. Journal of Infection. 72 (2) , 171-178. [More Information]
  • Gurjav, U., Erkhembayar, B., Burneebaatar, B., Narmandakh, E., Tumenbayar, O., Hill-Cawthorne, G., Marais, B., Sintchenko, V. (2016). Transmission of multi-drug resistant tuberculosis in Mongolia is driven by Beijing strains of Mycobacterium tuberculosis resistant to all first-line drugs. Tuberculosis. 101 , 49-53. [More Information]
  • Trinh, Q., Nguyen, H., Do, T., Nguyen, V., Nguyen, B., Nguyen, T., Sintchenko, V., Marais, B. (2016). Tuberculosis and HIV co-infection in Vietnam. International Journal of Infectious Diseases. 46 , 56-60. [More Information]
  • Gurjav, U., Outhred, A., Jelfs, P., Holmes (nee McCallum), N., Wang, Q., Hill-Cawthorne, G., Marais, B., Sintchenko, V. (2016). Whole genome sequencing demonstrates limited transmission within identified Mycobacterium tuberculosis clusters in New South Wales, Australia. PloS One. 11 (10) , 1-12. [More Information]
  • Phillips, A., Sotomayor Castillo, C., Wang, Q., Holmes, N., Furlong, C., Ward, K., Howard, P., Octavia, S., Lan, R., Sintchenko, V. (2016). Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014. BMC Microbiology. 16 (1) , 1-9. [More Information]
  • Martínez, E., Bustamante, A., Menon, R., Wang, Q., Jelfs, J., Marais, B., Chen, S., Sintchenko, V. (2016). Whole-genome sequencing of Mycobacterium tuberculosis for rapid diagnostics: Feasibility of a decentralised model. The Lancet Respiratory Medicine. 4 (4) , 13-14. [More Information]

2015
  • Outhred, A., Jelfs, P., Suliman, B., Hill-Cawthorne, G., Crawford, A., Marais, B., Sintchenko, V. (2015). Added value of whole-genome sequencing for management of highly drug-resistant TB. Journal of Antimicrobial Chemotherapy. 70 (4) , 1198-1202. [More Information]
  • Chua, K., Bustamante, A., Jelfs, P., Chen, S., Sintchenko, V. (2015). Antibiotic susceptibility of diverse Mycobacterium abscessus complex strains in New South Wales, Australia. Pathology. 47 (7) , 678-682. [More Information]
  • Sintchenko, V., Coiera, E., Kohane, Z. (2015). Bioinformatics. Guide to Health Informatics. 1 , 515-535.

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  • Sintchenko, V., Coiera, E. (2015). Clinical bioinformatics and personalized medicine. Guide to Health Informatics. , 537-554.
  • Fu, S., Octavia, S., Tanaka, M., Sintchenko, V., Lan, R. (2015). Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing. Journal of Clinical Microbiology. 53 (8) , 2530-2538. [More Information]
  • Octavia, S., Wang, Q., Tanaka, M., Kaur, S., Sintchenko, V., Lan, R. (2015). Delineating Community Outbreaks of Salmonella enterica Serovar Typhimurium by Use of Whole-Genome Sequencing: Insights into Genomic Variability within an Outbreak. Journal of Clinical Microbiology. 53 (4) , 1063-1071. [More Information]
  • Kok, J., Sintchenko, V., Dwyer, D., Chen, S. (2015). Editorial: Laboratory preparedness for Ebolavirus disease. Pathology. 47 (5) , 397-399. [More Information]
  • Khandkar, C., Harrington, Z., Jelfs, P., Sintchenko, V., Dobler, C. (2015). Epidemiology of Peripheral Lymph Node Tuberculosis and Genotyping of M tuberculosis Strains: A Case-Control Study. PloS One. 10 (7) , 1-10. [More Information]
  • Martinez, E., Holmes (nee McCallum), N., Jelfs, P., Sintchenko, V. (2015). Genome sequencing reveals novel deletions associated with secondary resistance to pyrazinamide in MDR Mycobacterium tuberculosis. Journal of Antimicrobial Chemotherapy. 70 (9) , 2511-2514. [More Information]
  • McCallum, N., Gray, T., Wang, Q., Ng, J., Hicks, L., Nguyen, T., Yuen, M., Hill-Cawthorne, G., Sintchenko, V. (2015). Genomic Epidemiology of Clostridium botulinum Isolates from Temporally Related Cases of Infant Botulism in New South Wales, Australia. Journal of Clinical Microbiology. 53 (9) , 2846-2853. [More Information]
  • Octavia, S., Wang, Q., Tanaka, M., Sintchenko, V., Lang, R. (2015). Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage. Journal of Clinical Microbiology. 53 (11) , 3507-3514. [More Information]
  • Baker, K., Dallman, T., Ashton, P., Day, M., Hughes, G., Crook, P., Gilbart, V., Zittermann, S., Allen, V., Howden, B., Sintchenko, V., et al (2015). Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. The Lancet Infectious Diseases. 15 (8) , 913-921. [More Information]
  • Wang, Q., Holmes (nee McCallum), N., Martinez, E., Howard, P., Hill-Cawthorne, G., Sintchenko, V. (2015). It is not all about Single Nucleotide Polymorphisms: Comparison of mobile genetic elements and deletions in Listeria monocytogenes genomes links cases of hospital-acquired listeriosis to the environmental source. Journal of Clinical Microbiology. 53 (11) , 3492-3500. [More Information]
  • Gupta, L., Sintchenko, V. (2015). Listeriosis cluster in Sydney linked to hospital food. Medical Journal of Australia. 202 (8) , 448-449.
  • Zhou, F., O'Sullivan, M., Iredell, J., Sintchenko, V., Gilbert, G., Dwyer, D. (2015). Molecular analysis of Enterovirus C species using the 5' untranslated region and VP1 region. Journal of Human Virology & Retrovirology. 2 (2) , 1-12. [More Information]
  • Roberts-Witteveen, A., Reinten, T., Christensen, A., Sintchenko, V., Seale, P., Lowbridge, C. (2015). Multidrug-resistant tuberculosis in New South Wales, Australia, 1999-2010: a case series report. International Journal of Tuberculosis and Lung Disease. 19 (7) , 850-856. [More Information]
  • Safarchi, A., Octavia, S., Luu, L., Tay, C., Sintchenko, V., Wood, N., Marshall, H., McIntyre, P., Lan, R. (2015). Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model. Vaccine. 33 (46) , 6277-6281. [More Information]
  • Sintchenko, V., Coiera, E. (2015). Population surveillance and public health informatics. Guide to Health Informatics. , 497-513.
  • Moran-Gilad, J., Sintchenko, V., Pedersen, S., Wolfgang, W., Pettengill, J., Strain, E., Hendriksen, R. (2015). Proficiency testing for bacterial whole genome sequencing: An end-user survey of current capabilities, requirements and priorities. BMC Infectious Diseases. 15 (1) , 1-10. [More Information]
  • Gurjav, U., Burneebaatar, B., Narmandakh, E., Tumenbayar, O., Ochirbat, B., Hill-Cawthorne, G., Marais, B., Sintchenko, V. (2015). Spatiotemporal evidence for cross-border spread of MDR-TB along the Trans-Siberian Railway line. International Journal of Tuberculosis and Lung Disease. 19 (11) , 1376-1382. [More Information]
  • Sintchenko, V., Holmes, E. (2015). The role of pathogen genomics in assessing disease transmission. BMJ. 350 , 1-13. [More Information]
  • Trinh, Q., Nguyen, H., Nguyen, V., Nguyen, T., Sintchenko, V., Marais, B. (2015). Tuberculosis and HIV co-infection-focus on the Asia-Pacific region. International Journal of Infectious Diseases. 32 , 170-178. [More Information]
  • Kwong, J., Holmes (nee McCallum), N., Sintchenko, V., Howden, B. (2015). Whole genome sequencing in clinical and public health microbiology. Pathology. 47 (3) , 199-210. [More Information]

2014
  • Rhoads, D., Sintchenko, V., Rauch, C., Pantanowitz, L. (2014). Clinical Microbiology Informatics. Clinical Microbiology Reviews. 27 (4) , 1025-1047. [More Information]
  • Ho, J., Jelfs, P., Sintchenko, V. (2014). Fluoroquinolone resistance in non-multidrug-resistant tuberculosis- a surveillance study in New South Wales, Australia, and a review of global resistance rates. International Journal of Infectious Diseases. 26 , 149-153. [More Information]
  • Bart, M., Harris, S., Advani, A., Arakawa, Y., Bottero, D., Bouchez, V., Cassiday, P., Chiang, C., Dalby, T., Fry, N., Sintchenko, V., et al (2014). Global population structure and evolution of Bordetella pertussis and their relationship with vaccination. mBio. 5 (2) , 1-13. [More Information]

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  • Gray, T., Kong, F., Jelfs, P., Sintchenko, V., Chen, S. (2014). Improved Identification of Rapidly Growing Mycobacteria by a 16S-23S Internal Transcribed Spacer Region PCR and Capillary Gel Electrophoresis. PloS One. 9 (7) , e102290. [More Information]
  • Muscatello, D., Amin, J., MacIntyre, C., Newall, A., Rawlinson, W., Sintchenko, V., Gilmour, R., Thackway, S. (2014). Inaccurate Ascertainment of Morbidity and Mortality due to Influenza in Administrative Databases: A Population-Based Record Linkage Study. PloS One. 9 (5) , 1-12. [More Information]
  • Lam, C., Octavia, S., Sintchenko, V., Gilbert, G., Lan, R. (2014). Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB). BMC Research Notes. 7 (1) , 1-8. [More Information]
  • Sintchenko, V., Roper, M. (2014). Pathogen Genome Bioinformatics. Clinical Bioinformatics. , 173-193.
  • Ellis, S., Kalinowski, D., Leotta, L., Huang, M., Jelfs, P., Sintchenko, V., Richardson, D., Triccas, J. (2014). Potent Anti-Mycobacterial Activity of the Pyridoxal Isonicotinoyl Hydrazone Analogue, 2-Pyridylcarboxaldehyde Isonicotinoyl Hydrazone: A Lipophilic Transport Vehicle for Isonicotinic Acid Hydrazide. Molecular Pharmacology. 85 (2) , 269-278. [More Information]
  • Lam, C., Octavia, S., Ricafort, L., Sintchenko, V., Gilbert, G., Wood, N., McIntyre, P., Marshall, H., Guiso, N., Keil, A., et al (2014). Rapid Increase in Pertactin-deficient Bordetella pertussis Isolates, Australia. Emerging Infectious Diseases. 20 (4) , 626-633. [More Information]
  • Gurjav, U., Jelfs, P., Holmes (nee McCallum), N., Marais, B., Sintchenko, V. (2014). Temporal dynamics of Mycobacterium tuberculosis genotypes in New South Wales, Australia. BMC Infectious Diseases. 14 (455) , 1-8. [More Information]
  • Zhou, F., Wang, Q., Sintchenko, V., Gilbert, G., O'Sullivan, M., Iredell, J., Dwyer, D. (2014). Use of the 5' Untranslated Region and VP1 Region to Examine the Molecular Diversity in Enterovirus B Species. Journal of Medical Microbiology. 63 (PT10) , 1339-1355. [More Information]

2013
  • Sadsad, R., Sintchenko, V., McDonnell, G., Gilbert, G. (2013). Effectiveness of Hospital-Wide Methicillin-Resistant Staphylococcus aureus (MRSA) Infection Control Policies Differs by Ward Specialty. PloS One. 8 (12) , 1-8. [More Information]
  • Ho, J., Jelfs, P., Sintchenko, V. (2013). Phenotypically occult multidrug-resistant Mycobacterium tuberculosis: Dilemmas in diagnosis and treatment. Journal of Antimicrobial Chemotherapy. 68 (12) , 2915-2920. [More Information]
  • O'Sullivan, M., Sintchenko, V., Gilbert, G. (2013). Quantitative Estimation of the Stability of Methicillin-Resistant Staphylococcus aureus Strain-Typing Systems by Use of Kaplan-Meier Survival Analysis. Journal of Clinical Microbiology. 51 (1) , 112-116. [More Information]

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  • O'Sullivan, M., Sintchenko, V., Gilbert, G. (2013). Software for selecting the most informative sets of genomic loci for multi-target microbial typing. BMC Bioinformatics. 14 (148) , 1-8. [More Information]
  • McIntyre, P., Sintchenko, V. (2013). The "How" of Polymerase Chain Reaction Testing for Bordetella pertussis Depends on the "Why". Clinical Infectious Diseases. 56 (3) , 332-334. [More Information]
  • Le Hello, S., Bekhit, A., Granier, S., Barua, H., Beutlich, J., Zajac, M., Munch, S., Sintchenko, V., Bouchrif, B., Fashae, K., et al (2013). The global establishment of a highly-fluoroquinolone resistant Salmonella enterica serotype Kentucky ST198 strain. Frontiers in Microbiology. 4 , 1-10. [More Information]
  • Gilbert, G., Sintchenko, V. (2013). The use of mycobacterial interspersed repetitive unit typing and whole genome sequencing to inform tuberculosis prevention and control activities. NSW Public Health Bulletin. 24 (1) , 10-14. [More Information]
  • Stephens, N., Vogelnest, L., Lowbridge, C., Christensen, A., Marks, G., Sintchenko, V., McAnulty, J. (2013). Transmission of Mycobacterium tuberculosis from an Asian elephant (Elephas maximus) to a chimpanzee (Pan troglodytes) and humans in an Australian zoo. Epidemiology and Infection. 141 (7) , 1488-1497. [More Information]
  • Marks, G., Christensen, A., Sintchenko, V., Lowbridge, C. (2013). Tuberculosis: an old world disease providing new world challenges in NSW. NSW Public Health Bulletin. 24 (1) , 22-23.

2012
  • Gilbert, G., Sintchenko, V. (2012). Assignment of recA reference sequence types for enhanced identification of the Burkholderia cepacia complex. Pathology. 44 (4) , 373-375. [More Information]
  • Jackson, J., McGregor, A., Cooley, L., Ng, J., Brown, M., Ong, C., Darcy, C., Sintchenko, V. (2012). Francisella tularensis subspecies holarctica, Tasmania, Australia, 2011. Emerging Infectious Diseases. 18 (9) , 1484-1486. [More Information]
  • Pang, S., Octavia, S., Reeves, P., Wang, Q., Gilbert, G., Sintchenko, V., Lan, R. (2012). Genetic Relationships of Phage Types and Single Nucleotide Polymorphism Typing of Salmonella enterica Serovar Typhimurium. Journal of Clinical Microbiology. 50 (3) , 727-734. [More Information]

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  • Lau, A., Sintchenko, V., Crimmins, J., Magrabi, F., Gallego, B., Coiera, E. (2012). Impact of a web-based personally controlled health management system on influenza vaccination and health services utilization rates: a randomized controlled trial. Journal of the American Medical Informatics Association. 19 (5) , 719-727. [More Information]
  • Sintchenko, V., Wang, Q., Howard, P., Ha, C., Kardamanidis, K., Musto, J., Gilbert, G. (2012). Improving resolution of public health surveillance for human Salmonella enterica serovar Typhimurium infection: 3 years of prospective multiple-locus variable-number tandem-repeat analysis (MLVA). BMC Infectious Diseases. 12 (31 March 2012) , 1-10. [More Information]
  • Helal, M., Kong, F., Chen, S., Zhou, F., Dwyer, D., Potter, J., Sintchenko, V. (2012). Linear normalised hash function for clustering gene sequences and identifying reference sequences from multiple sequence alignments. Microbial Informatics and Experimentation. 2 (1) , 1-11. [More Information]
  • Octavia, S., Sintchenko, V., Gilbert, G., Lawrence, A., Keil, A., Hogg, G., Lan, R. (2012). Newly emerging clones of Bordetella pertussis carrying prn2 and ptxP3 alleles implicated in Australian pertussis epidemic in 2008-2010. The Journal of Infectious Diseases. 205 (8) , 1220-1224. [More Information]
  • O'Sullivan, M., Zhou, F., Sintchenko, V., Gilbert, G. (2012). Prospective Genotyping of Hospital-Acquired Methicillin-Resistant Staphylococcus aureus by Use of a Novel, Highly Discriminatory Binary Typing System. Journal of Clinical Microbiology. 50 (11) , 3513-3519. [More Information]
  • Lau, A., Sintchenko, V., Crimmins, J., Magrabi, F., Gallego, B., Coiera, E. (2012). Protocol for a randomised controlled trial examining the impact of a web-based personally controlled health management system on the uptake of influenza vaccination rates. BMC Health Services Research. 12 (1) , 1-10. [More Information]
  • Lam, C., Octavia, S., Bahrame, Z., Sintchenko, V., Gilbert, G., Lan, R. (2012). Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis. Infection, Genetics and Evolution. 12 (2) , 492-495. [More Information]

2011
  • Lin, F., Lan, R., Sintchenko, V., Gilbert, G., Kong, F., Coiera, E. (2011). Computational Bacterial Genome-Wide Analysis of Phylogenetic Profiles Reveals Potential Virulence Genes of Streptococcus agalactiae. PloS One. 6 (4) , e17964-1-e17964-10. [More Information]
  • Helal, M., Kong, F., Chen, S., Bain, M., Christen, R., Sintchenko, V. (2011). Defining Reference Sequences for Nocardia Species by Similarity and Clustering Analyses of 16S rRNA Gene Sequence Data. PloS One. 6 (6) , e19517-1-e19517-11. [More Information]
  • Watts, M., Taylor, P., Sintchenko, V., Whelan, C., Farnsworth, R., Jones, P., Jelfs, P., Carr, D., Goldberg, H. (2011). Implications of isoniazid resistance in Mycobacterium bovis Bacillus Calmette-Guérin used for immunotherapy in bladder cancer. Clinical Infectious Diseases. 52 (1) , 86-88. [More Information]

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  • Wang, T., Kong, F., Chen, S., Xiao, M., Sorrell, T., Wang, X., Wang, S., Sintchenko, V. (2011). Improved identification of Gordonia, Rhodococcus and Tsukamurella species by 5'-end 16S rRNA gene sequencing.. Pathology. 43 (1) , 58-63. [More Information]
  • Octavia, S., Maharjan, R., Sintchenko, V., Stevenson, G., Reeves, P., Gilbert, G., Lan, R. (2011). Insight into evolution of Bordetella pertussis from comparative genomic analysis: evidence of vaccine-driven selection. Molecular Biology and Evolution. 28 (1) , 707-715. [More Information]
  • O'Sullivan, M., Zhou, F., Sintchenko, V., Kong, F., Gilbert, G. (2011). Multiplex PCR and Reverse Line Blot Hybridization Assay (mPCR/RLB). Journal of Visualized Experiments. 6 (54) , e2781-1-e2781-5. [More Information]
  • Sintchenko, V., Coiera, E. (2011). Translational web robots for pathogen genome analysis. Microbial Informatics and Experimentation. 1 (1) , 1-4. [More Information]

2010
  • Sintchenko, V., Anthony, S., Phan, X., Lin, F., Coiera, E. (2010). A PubMed-wide associational study of infectious diseases. PloS One. 5 (3) , e9535-1-e9535-12. [More Information]
  • Kurniawan, J., Maharjan, R., Chan, W., Reeves, P., Sintchenko, V., Gilbert, G., Mooi, F., Lan, R. (2010). Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis. Emerging Infectious Diseases. 16 (2) , 297-300. [More Information]
  • Xiao, M., Kong, F., Sorrell, T., Cao, Y., Lee, O., Liu, Y., Sintchenko, V., Chen, S. (2010). Identification of Pathogenic Nocardia Species by Reverse Line Blot Hybridization Targeting the 16S rRNA and 16S-23S rRNA Gene Spacer Regions. Journal of Clinical Microbiology. 48 (2) , 503-511. [More Information]

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  • Sintchenko, V. (2010). Infectious Disease Informatics. Infectious Disease Informatics.
  • Sintchenko, V. (2010). Informatics for Infectious Disease Research and Control. Infectious Disease Informatics. , 1-26.
  • O'Sullivan, M., Kong, F., Sintchenko, V., Gilbert, G. (2010). Rapid Identification of MRSA Transmission in Hospitals using Phage-Derived ORF Typing enhanced by Multiplex PCR and Reverse Line Blot Assay. Journal of Clinical Microbiology. 48 (8) , 2741-2748. [More Information]
  • Wang, X., Xiao, M., Kong, F., Sintchenko, V., Wang, H., Wang, B., Lian, S., Sorrell, T., Chen, S. (2010). Reverse line blot hybridization and DNA sequencing studies of the 16S-23S rRNA gene intergenic spacer regions of five emerging pathogenic Nocardia species. Journal of Medical Microbiology. 59 (Pt 5) , 548-555. [More Information]
  • Kong, F., Wang, H., Zhang, E., Sintchenko, V., Xiao, M., Sorrell, T., Chen, X., Chen, S. (2010). SecA1 Gene Sequence Polymorphisms for Species Identification of Nocardia and Recognition of Intraspecies Genetic Diversity. Journal of Clinical Microbiology. 48 (11) , 3928-3934. [More Information]
  • Anthony, S., Sintchenko, V., Coiera, E. (2010). Text Mining for Discovery of Host-Pathogen Interactions. Infectious Disease Informatics. , 149-165.
  • Gallego, B., Sintchenko, V., Jelfs, P., Coiera, E., Gilbert, G. (2010). Three-year longitudinal study of genotypes of Mycobacterium tuberculosis in a low prevalence population.. Pathology. 42 (3) , 267-272. [More Information]
  • Liu, Y., Kong, F., Xiao, M., Wang, Q., O'Sullivan, M., Sintchenko, V., Lin, M., Gilbert, G. (2010). Unexpected Diversity of Staphylococcal Cassette Chromosome mec Type IV in Methicillin-Resistant Staphylococcus aureus Strains. Journal of Clinical Microbiology. 48 (10) , 3628-3634. [More Information]
  • Couldwell, D., Gidding, H., Freedman, E., Mckechnie, M., Biggs, K., Sintchenko, V., Gilbert, G. (2010). Ureaplasma urealyticum is significantly associated with non-gonococcal urethritis in heterosexual Sydney men. International Journal of STD and AIDS. 21 (5) , 337-341. [More Information]

2009
  • Cai, L., Kong, F., Wang, Q., Wang, H., Xiao, M., Sintchenko, V., Gilbert, G. (2009). A new multiplex PCR-based reverse line-blot hybridization (mPCR/RLB) assay for rapid staphylococcal cassette chromosome mec (SCCmec) typing. Journal of Medical Microbiology. 58 (8) , 1045-1057. [More Information]
  • Kong, F., Chen, S., Chen, X., Sintchenko, V., Halliday, C., Cai, L., Tong, Z., Lee, O., Sorrell, T. (2009). Assignment of Reference 5’-end 16S rDNA Sequences and Species-Specific Sequence Polymorphisms Improves Species Identification of Nocardia. The Open Microbiology Journal. 3 , 97-105.
  • Gallego, B., Sintchenko, V., Wang, Q., Hiley, L., Gilbert, G., Coiera, E. (2009). Biosurveillance of emerging biothreats using scalable genotype clustering. Journal of Biomedical Informatics. 42 (1) , 66-73. [More Information]

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  • Lin, F., Sintchenko, V., Kong, F., Gilbert, G., Coiera, E. (2009). Commonly used molecular epidemiology markers of Streptococcus agalactiae do not appear to predict virulence. Pathology. 41 (6) , 576-581. [More Information]
  • Helal, M., Sintchenko, V. (2009). Dynamic programming algorithms for discovery of antibiotic resistance in microbial genomes. 17th National Health Informatics Conference (HIC 2009). , 52-56.
  • Lee, A., Jelfs, P., Sintchenko, V., Gilbert, G. (2009). Identification of non-tuberculous mycobacteria: Utility of the GenoType Mycobacterium CM/AS assay compared with HPLC and 16S rRNA gene sequencing. Journal of Medical Microbiology. 58 (7) , 900-904. [More Information]
  • Lin, F., Coiera, E., Lan, R., Sintchenko, V. (2009). In silico prioritisation of candidate genes for prokaryotic gene function discovery: An application of phylogenetic profiles. BMC Bioinformatics. 10 , 1-12. [More Information]
  • van Hal, S., Foo, H., Blyth, C., McPhie, K., Armstrong, P., Sintchenko, V., Dwyer, D. (2009). Influenza outbreak during Sydney World Youth Day 2008: the utility of laboratory testing and case definitions on mass gathering outbreak containment. PloS One. 4 (9) , e6620 - 1-e6620 - 10. [More Information]
  • Sintchenko, V., Gallego, B. (2009). Laboratory-guided detection of disease outbreaks: three generations of surveillance systems. Archives of Pathology & Laboratory Medicine. 133 (6) , 916-925.
  • Akhtar, M., Gallego, B., Shiue, A., Sintchenko, V. (2009). Prospective Biosurveillance for Early Detection of Disease Outbreaks. 17th National Health Informatics Conference (HIC 2009). , 132-136.
  • Cai, L., Kong, F., Jelfs, P., Gilbert, G., Sintchenko, V. (2009). Rolling circle amplification and multiplex allele-specific PCR for rapid detection of katG and inhA gene mutations in Mycobacterium tuberculosis. International Journal of Medical Microbiology. 299 (8) , 574-581. [More Information]
  • Coiera, E., Lau, A., Tsafnat, G., Sintchenko, V., Magrabi, F. (2009). The changing nature of clinical decision support systems: a focus on consumers, genomics, public health and decision safety.. Yearbook of medical informatics. , 84-95.
  • Sintchenko, V., Gallego, B., Chung, G., Coiera, E. (2009). Towards bioinformatics assisted infectious disease control. BMC Bioinformatics. 10 (Suppl 2) , S10-1-S10-9. [More Information]

2008
  • Sintchenko, V., Coiera, E., Gilbert, G. (2008). Decision support systems for antibiotic prescribing. Current Opinion in Infectious Diseases. 21 (6) , 573-579. [More Information]
  • Sintchenko, V., Coiera, E. (2008). Developing Decision Support Systems in Clinical Bioinformatics. Clinical Bioinformatics: Methods in Molecular Medicine. 141 , 331-351.
  • Maharjan, R., Gu, C., Reeves, P., Sintchenko, V., Gilbert, G., Lan, R. (2008). Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing. Research in Microbiology. 159 , 602-608. [More Information]

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  • Sintchenko, V. (2008). The re-emergence of pertussis: implications for diagnosis and surveillance. NSW Public Health Bulletin. 19 (7-8) , 143-145.

2007
  • Merritt, T., Sintchenko, V., Jelfs, P., Worthing, M., Robinson, B., Durrheim, D., Gilbert, G. (2007). An outbreak of pulmonary tuberculosis in young Australians. Medical Journal of Australia. 186 (5) , 240-242.
  • Sintchenko, V., Usherwood, T., Coiera, E. (2007). Are clinicians' information needs and decision support affected by different models of care? Experimental study. Studies in Health Technology and Informatics. 129 (2) , 895-899.
  • Sintchenko, V., Usherwood, T., Coiera, E. (2007). Are Clinicians' Information Needs and Decision Support Affected by Different Models of Care? Experimental Study. MedInfo 2007:12th World Congress on Health (Medical) Informatics. 2 , 895-899.

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  • Sintchenko, V., Magrabi, F., Tipper, S. (2007). Are we measuring the right end-points? Variables that affect the impact of computerised decision support on patient outcomes: A systematic review. Medical Informatics and the Internet in Medicine. 32 (3) , 225-240.
  • Cai, Y., Kong, F., Wang, Q., Tong, Z., Sintchenko, V., Zeng, X., Gilbert, G. (2007). Comparison of Single- and Multilocus Sequence Typing and Toxin Gene Profiling for Characterization of Methicillin-Resistant Staphylococcus aureus. Journal of Clinical Microbiology. 45 (10) , 3302-3308.
  • Sintchenko, V., Brown, M., Gilbert, G. (2007). Is Bordetella pertussis susceptibility to erythromycin changing? MIC trends among Australian isolates 1971-2006. Journal of Antimicrobial Chemotherapy. 60 (5) , 1178-1179.
  • Sintchenko, V., Iredell, J., Gilbert, G. (2007). Pathogen profiling for disease management and surveillance. Nature Reviews Microbiology. 5 (6) , 464-470.
  • Dwyer, D., Sintchenko, V. (2007). Point-of-care testing for community-acquired pneumonia: do we have all the answers?. Medical Journal of Australia. 187 (1) , 40-42.
  • Coiera, E., Magrabi, F., Sintchenko, V., Zrimec, T., McDonnell, G., Chung, G., Tsafnat, G. (2007). The Centre for Health Informatics at the University of New South Wales – a Clinical Informatics Research Centre. Methods of Information in Medicine. 46 (Suppl. 1) , 141-148.

2006
  • Sintchenko, V., Jelfs, P., Dally, M., Crighton, T., Gilbert, G. (2006). A case of urinary tuberculosis due to Mycobacterium bovis subspecies caprae. Pathology. 38 (4) , 376-378.
  • Sintchenko, V., Persson, L., Lanser, J. (2006). Communicable Disease Informatics – Emerging Concepts in Disease Surveillance. 14th National Health Informatics Conference (HIC 2006 Bridging the Digital Divide: Clinicians, Consumers and Computers). on-line , 158-163.
  • Sintchenko, V., Coiera, E. (2006). Decision Complexity Affects the Extent and Type of Decision Support Use. AMIA 2006: Biomedical and Health Informatics. 2006 , 724-728.

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  • Jelfs, P., Sintchenko, V., Gilbert, G. (2006). Genotyping of Mycobacterium tuberculosis in New South Wales: Results from 18 months of a statewide trial.. NSW Public Health Bulletin. 17 , 81-85.
  • Sintchenko, V. (2006). Information Processing in Clinical Decision-Making. Handbook of Research on Informatics in Healthcare And Biomedicine. , 147-153.
  • Iredell, J., Sintchenko, V. (2006). Screening for antibiotic resistant Gram-negative bacteria. The Lancet Infectious Diseases. 6 , 316-317.
  • Sintchenko, V., Gilbert, G. (2006). Utility of genotyping of Mycobacterium tuberculosis in the contact investigation: A decision analysis.. Tuberculosis. 87 (3) , 176-184.

2005
  • Sintchenko, V., Iredell, J., Gilbert, G., Coiera, E. (2005). Handheld computer-based decision support reduces patient length of stay and antibiotic prescribing in critical care.. Journal of the American Medical Informatics Association. 12 (4) , 398-402.

2004
  • Sintchenko, V., Coiera, E., Iredell, J., Gilbert, G. (2004). Comparative Impact Of Guidelines, Clinical Data, And Decision Support On Prescribing Decisions: An Interactive Web Experiment With Simulated Cases.. Journal of the American Medical Informatics Association. 11 (1) , 71-77.

2003
  • Sintchenko, V., Coiera, E. (2003). Which clinical decisions benefit from automation? A task complexity approach. International Journal of Medical Informatics. 70 (2-3) , 309-316.

2002
  • Sintchenko, V., Westbrook, J., Tipper, S., Mathieu, M., Coiera, E. (2002). Electronic decision support activities in different healthcare settings in Australia. Electronic decision support for Australia's health sector: Report to Health Ministers by the National Electronic Decision Support Taskforce. , Appendix A - 1-Appendix A - 167.